Curved dna-binding protein
WebApr 1, 1998 · An even stronger indication that this is the case comes from experiments in which a sequence-specific binding protein could be functionally substituted for by an intrinsically curved DNA sequence (e.g., ref 41). Spacing and/or phasing of the bend with respect to regulatory DNA elements (e.g., binding sites for transcription factors) was … WebThe curved DNA-binding protein, CbpA, appears only in the late stationary phase. These changes in the composition of nucleoid-associated proteins in the stationary phase are …
Curved dna-binding protein
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WebJun 10, 2016 · Scientific Reports - PDNAsite: Identification of DNA-binding Site from Protein Sequence by Incorporating Spatial and Sequence Context. ... (ROC) curve 32 and the area under ROC curve (AUC) ... http://malone.bioquant.uni-heidelberg.de/teaching/pdf-files_teaching-3/Rippe_Futura_97.pdf
WebSingle-Stranded DNA Binding Proteins: Methods and Protocols assembles methods developed for examining the fundamental properties of SSBs and for exploiting the biochemical functions of SSBs for their use as in vitro and in vivo reagents. Clearly and concisely organized, the volume opens with an introduction to the structures and … WebApr 11, 2024 · Furthermore, the prediction of DNA-binding proteins is essential for the chemical modification and structural composition of DNA, and is of great importance in protein functional analysis and drug design. ... The closer the ROC curve is to the Y-axis, the larger the area between the ROC curve and the X-axis, i.e., the greater the AUC …
http://malone.bioquant.uni-heidelberg.de/teaching/pdf-files_teaching-3/Rippe_Futura_97.pdf WebIn E. coli, some nucleoid-associated proteins, such as H-NS (histone-like nucleoid-structuring protein), CbpA (curved DNA-binding protein A), …
WebDNA-binding protein that preferentially recognizes a curved DNA sequence. It is probably a functional analog of DnaJ; displays overlapping activities with DnaJ, but functions under different conditions, probably acting as a molecular chaperone in an adaptive response to environmental stresses other than heat shock. Lacks autonomous chaperone activity; …
WebAnalysis of protein-DNA binding at equilibrium temperature, etc.). Examples of binding curves for the binding of a protein to a single DNA binding site are shown in Fig. 1 and 2. If the DNA concentration in the solution is much larger than the dissociation constant (Dtot >> Kdis) virtually every protein molecule added will be bound until all ... do fax machines have hard drivesWebJan 17, 2013 · The Escherichia coli curved DNA binding protein A (CbpA) is a poorly characterised nucleoid associated factor and co-chaperone. It is expressed at high levels as cells enter stationary phase. Using genetics, biochemistry, and genomics, we have examined regulation of, and DNA binding by, CbpA. We show that Fis, the dominant … do fatty tumors grow fastWebIn this paper we report the localization of a curved DNA sequence inside the gene for the NADH dehydrogenase subunit 2 (ND2) upstream Ori-L. We also present the purification … dofaw honoluluWebA conserved KIN17 curved DNA-binding domain protein assembles with SQUAMOSA PROMOTER-BINDING PROTEIN-LIKE7 to adapt Arabidopsis growth and development … do fatty foods clog arteriesWebAug 25, 2010 · The Escherichia coli curved DNA-binding protein A (CbpA) is a nucleoid-associated DNA-binding factor and chaperone that is expressed at high levels as cells enter stationary phase. Using a combination of genetics, biochemistry, structural modelling and single-molecule atomic force microscopy we have examined dimerization of, and … facts about johnson and johnsonWebCurved DNA The CTDII domain of CbpA mediates dimerization of the protein, which is a pre-requisite for DNA binding (Bird et al., 2006). From: Advances in Applied … do fatty livers heal on their ownWebApr 14, 2024 · Cell-free DNA (cfDNA) circulates in the bloodstream packed in membrane-coated structures (such as apoptotic bodies) or bound to proteins. To identify proteins involved in the formation of deoxyribonucleoprotein complexes circulating in the blood, native complexes were isolated using affinity chromatography with immobilized … do faucet handles pop off